HMGN3 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HMGN3

High mobility group nucleosomal binding domain 3. (200 aa)

Predicted Functional Partners:

HMGN2-2

0.706

ENSCAFP00000051556

0.706

ENSCAFP00000059929

0.706

ENSCAFP00000060382

0.706

ENSCAFP00000061845

0.706

ENSCAFP00000063152

0.706

IKZF5

0.692

HMGN2

0.675

IPPK

0.657

SLC6A9

0.619

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCAFP00000051556	HMGN3	ENSCAFP00000051556	ENSCAFP00000004159	Uncharacterized protein.	High mobility group nucleosomal binding domain 3.	0.706
ENSCAFP00000059929	HMGN3	ENSCAFP00000059929	ENSCAFP00000004159	Uncharacterized protein.	High mobility group nucleosomal binding domain 3.	0.706
ENSCAFP00000060382	HMGN3	ENSCAFP00000060382	ENSCAFP00000004159	Uncharacterized protein.	High mobility group nucleosomal binding domain 3.	0.706
ENSCAFP00000061845	HMGN3	ENSCAFP00000061845	ENSCAFP00000004159	Uncharacterized protein.	High mobility group nucleosomal binding domain 3.	0.706
ENSCAFP00000063152	HMGN3	ENSCAFP00000063152	ENSCAFP00000004159	Uncharacterized protein.	High mobility group nucleosomal binding domain 3.	0.706
HMGN2	HMGN3	ENSCAFP00000057354	ENSCAFP00000004159	Non-histone chromosomal protein HMG-17; Binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer. May be involved in the process which maintains transcribable genes in a unique chromatin conformation (By similarity).	High mobility group nucleosomal binding domain 3.	0.675
HMGN2-2	HMGN3	ENSCAFP00000049701	ENSCAFP00000004159	Uncharacterized protein.	High mobility group nucleosomal binding domain 3.	0.706
HMGN3	ENSCAFP00000051556	ENSCAFP00000004159	ENSCAFP00000051556	High mobility group nucleosomal binding domain 3.	Uncharacterized protein.	0.706
HMGN3	ENSCAFP00000059929	ENSCAFP00000004159	ENSCAFP00000059929	High mobility group nucleosomal binding domain 3.	Uncharacterized protein.	0.706
HMGN3	ENSCAFP00000060382	ENSCAFP00000004159	ENSCAFP00000060382	High mobility group nucleosomal binding domain 3.	Uncharacterized protein.	0.706
HMGN3	ENSCAFP00000061845	ENSCAFP00000004159	ENSCAFP00000061845	High mobility group nucleosomal binding domain 3.	Uncharacterized protein.	0.706
HMGN3	ENSCAFP00000063152	ENSCAFP00000004159	ENSCAFP00000063152	High mobility group nucleosomal binding domain 3.	Uncharacterized protein.	0.706
HMGN3	HMGN2	ENSCAFP00000004159	ENSCAFP00000057354	High mobility group nucleosomal binding domain 3.	Non-histone chromosomal protein HMG-17; Binds to the inner side of the nucleosomal DNA thus altering the interaction between the DNA and the histone octamer. May be involved in the process which maintains transcribable genes in a unique chromatin conformation (By similarity).	0.675
HMGN3	HMGN2-2	ENSCAFP00000004159	ENSCAFP00000049701	High mobility group nucleosomal binding domain 3.	Uncharacterized protein.	0.706
HMGN3	IKZF5	ENSCAFP00000004159	ENSCAFP00000035949	High mobility group nucleosomal binding domain 3.	IKAROS family zinc finger 5.	0.692
HMGN3	IPPK	ENSCAFP00000004159	ENSCAFP00000003335	High mobility group nucleosomal binding domain 3.	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate).	0.657
HMGN3	SLC6A9	ENSCAFP00000004159	ENSCAFP00000059161	High mobility group nucleosomal binding domain 3.	Solute carrier family 6 member 9.	0.619
IKZF5	HMGN3	ENSCAFP00000035949	ENSCAFP00000004159	IKAROS family zinc finger 5.	High mobility group nucleosomal binding domain 3.	0.692
IPPK	HMGN3	ENSCAFP00000003335	ENSCAFP00000004159	Inositol-pentakisphosphate 2-kinase; Phosphorylates Ins(1,3,4,5,6)P5 at position 2 to form Ins(1,2,3,4,5,6)P6 (InsP6 or phytate).	High mobility group nucleosomal binding domain 3.	0.657
SLC6A9	HMGN3	ENSCAFP00000059161	ENSCAFP00000004159	Solute carrier family 6 member 9.	High mobility group nucleosomal binding domain 3.	0.619