GRSF1 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GRSF1

G-rich RNA sequence binding factor 1. (318 aa)

Predicted Functional Partners:

MGME1

0.698

IGBP1

0.633

ND6

0.614

TRMT10C

0.596

DHX30

0.592

RMND1

0.591

FASTKD2

0.586

SLIRP

0.586

LRPPRC

0.578

MTPAP

0.567

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DHX30	FASTKD2	ENSCAFP00000019224	ENSCAFP00000019819	DExH-box helicase 30.	FAST kinase domains 2.	0.729
DHX30	GRSF1	ENSCAFP00000019224	ENSCAFP00000004324	DExH-box helicase 30.	G-rich RNA sequence binding factor 1.	0.592
DHX30	LRPPRC	ENSCAFP00000019224	ENSCAFP00000003683	DExH-box helicase 30.	Leucine rich pentatricopeptide repeat containing.	0.460
DHX30	MGME1	ENSCAFP00000019224	ENSCAFP00000008138	DExH-box helicase 30.	Uncharacterized protein.	0.515
DHX30	MTPAP	ENSCAFP00000019224	ENSCAFP00000005913	DExH-box helicase 30.	Mitochondrial poly(A) polymerase.	0.464
DHX30	SLIRP	ENSCAFP00000019224	ENSCAFP00000046605	DExH-box helicase 30.	SRA stem-loop interacting RNA binding protein.	0.471
DHX30	TRMT10C	ENSCAFP00000019224	ENSCAFP00000038890	DExH-box helicase 30.	tRNA methyltransferase 10C, mitochondrial RNase P subunit.	0.538
FASTKD2	DHX30	ENSCAFP00000019819	ENSCAFP00000019224	FAST kinase domains 2.	DExH-box helicase 30.	0.729
FASTKD2	GRSF1	ENSCAFP00000019819	ENSCAFP00000004324	FAST kinase domains 2.	G-rich RNA sequence binding factor 1.	0.586
FASTKD2	LRPPRC	ENSCAFP00000019819	ENSCAFP00000003683	FAST kinase domains 2.	Leucine rich pentatricopeptide repeat containing.	0.520
FASTKD2	MTPAP	ENSCAFP00000019819	ENSCAFP00000005913	FAST kinase domains 2.	Mitochondrial poly(A) polymerase.	0.587
FASTKD2	ND6	ENSCAFP00000019819	ENSCAFP00000030320	FAST kinase domains 2.	NADH-ubiquinone oxidoreductase chain 6; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone (By similarity).	0.453
FASTKD2	SLIRP	ENSCAFP00000019819	ENSCAFP00000046605	FAST kinase domains 2.	SRA stem-loop interacting RNA binding protein.	0.422
FASTKD2	TRMT10C	ENSCAFP00000019819	ENSCAFP00000038890	FAST kinase domains 2.	tRNA methyltransferase 10C, mitochondrial RNase P subunit.	0.501
GRSF1	DHX30	ENSCAFP00000004324	ENSCAFP00000019224	G-rich RNA sequence binding factor 1.	DExH-box helicase 30.	0.592
GRSF1	FASTKD2	ENSCAFP00000004324	ENSCAFP00000019819	G-rich RNA sequence binding factor 1.	FAST kinase domains 2.	0.586
GRSF1	IGBP1	ENSCAFP00000004324	ENSCAFP00000024637	G-rich RNA sequence binding factor 1.	Immunoglobulin binding protein 1.	0.633
GRSF1	LRPPRC	ENSCAFP00000004324	ENSCAFP00000003683	G-rich RNA sequence binding factor 1.	Leucine rich pentatricopeptide repeat containing.	0.578
GRSF1	MGME1	ENSCAFP00000004324	ENSCAFP00000008138	G-rich RNA sequence binding factor 1.	Uncharacterized protein.	0.698
GRSF1	MTPAP	ENSCAFP00000004324	ENSCAFP00000005913	G-rich RNA sequence binding factor 1.	Mitochondrial poly(A) polymerase.	0.567