STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL27A1Collagen type XXVII alpha 1 chain. (1355 aa)    
Predicted Functional Partners:
DUSP27
Dual specificity phosphatase 27, atypical; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.
    
 
 0.665
LRFN4
Leucine rich repeat and fibronectin type III domain containing 4.
    
 
 0.661
EFHB
EF-hand domain family member B.
      
 0.644
TMC6
Transmembrane channel-like protein.
    
 
 0.594
SLITRK1
SLIT and NTRK like family member 1.
    
 
 0.581
RAVER1
Uncharacterized protein.
      
 0.575
KPNA6
Importin subunit alpha; Functions in nuclear protein import.
      
 0.569
SCLY
Selenocysteine lyase.
      
 0.566
SHC4
SHC adaptor protein 4.
      
 0.561
NKRF
NFKB repressing factor.
    
 
 0.517
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.