STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP38Ubiquitin specific peptidase 38; Belongs to the peptidase C19 family. (1037 aa)    
Predicted Functional Partners:
WDR48
WD repeat domain 48.
    
 0.727
USP39
Ubiquitin specific peptidase 39.
   
  
 0.678
HERC2
HECT and RLD domain containing E3 ubiquitin protein ligase 2.
    
   0.626
MRPL38
Mitochondrial ribosomal protein L38.
      
 0.614
STING1
Transmembrane protein 173.
    
 
 0.583
HHIP
Hedgehog interacting protein.
      
 0.573
PPM1B
Protein phosphatase, Mg2+/Mn2+ dependent 1B.
   
 
 0.566
TRAF6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 
 0.556
RNF128
Ring finger protein 128.
      
 0.534
INPP4B
Inositol polyphosphate-4-phosphatase type II B.
      
 0.527
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.