STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38APre-mRNA processing factor 38A. (312 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
   
 
 0.970
PLRG1
Pleiotropic regulator 1.
 
 
  
 0.910
RNPS1
RNA binding protein with serine rich domain 1.
   
 
 0.840
SRSF3
Serine and arginine rich splicing factor 3.
   
 
 0.818
RBM39
RNA binding motif protein 39.
    
 
 0.793
PPIG
Peptidylprolyl isomerase G.
   
 
 0.787
PRPF3
Pre-mRNA processing factor 3.
   
 
 0.786
TCERG1
Transcription elongation regulator 1.
   
 
 0.756
JMJD6
Jumonji domain containing 6, arginine demethylase and lysine hydroxylase.
   
 
 0.753
BUD13
BUD13 homolog.
   
 
 0.732
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.