STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UROC1Urocanate hydratase 1. (735 aa)    
Predicted Functional Partners:
HAL
Histidine ammonia-lyase; Belongs to the PAL/histidase family.
 
 
 0.991
SNRPF
Amidohydrolase domain containing 1.
  
 
 0.971
FTCD
Formimidoyltransferase cyclodeaminase.
  
  
 0.768
TXNRD3
Thioredoxin reductase 3.
      
 0.763
PXDC1
PX domain containing 1.
      
 0.690
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
      
 0.617
DDB2
Damage specific DNA binding protein 2.
    
 
 0.604
XPA
XPA, DNA damage recognition and repair factor.
    
 
 0.593
UBE3A
Ubiquitin-protein ligase E3A; E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and transfers it to its substrates.
      
 0.591
AQP3
Uncharacterized protein.
   
 
 0.532
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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