STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDC40Cell division cycle 40. (655 aa)    
Predicted Functional Partners:
DHX38
DEAH-box helicase 38.
   
 0.989
PRPF18
SFM domain-containing protein.
   
 0.987
SLU7
SLU7 homolog, splicing factor.
   
 0.977
CWC25
CWC25 spliceosome associated protein homolog.
    
 0.972
CWC22
CWC22 spliceosome associated protein homolog.
   
 0.972
YJU2
YJU2 splicing factor homolog.
   
 0.971
HTATSF1
Uncharacterized protein.
     
 0.966
DHX8
DEAH-box helicase 8.
   
 0.964
SYF2
Uncharacterized protein.
   
 0.963
PRPF19
Pre-mRNA processing factor 19.
   
0.963
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.