STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATPAF1ATP synthase mitochondrial F1 complex assembly factor 1. (394 aa)    
Predicted Functional Partners:
ATP5F1B
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane.
    
 
 0.914
ATPAF2
ATP synthase mitochondrial F1 complex assembly factor 2.
   
 
 0.879
REV3L
REV3 like, DNA directed polymerase zeta catalytic subunit.
      
 0.773
CDCA8
Cell division cycle associated 8.
    
 
 0.706
OGG1
8-oxoguanine DNA glycosylase.
      
 0.686
ATP5F1C
ATP synthase subunit gamma.
   
  
 0.600
MRPL23
Uncharacterized protein.
   
  
 0.598
PUM1
Pumilio RNA binding family member 1.
    
 
 0.597
PUM2
Pumilio RNA binding family member 2.
    
 
 0.597
ERAL1
Era like 12S mitochondrial rRNA chaperone 1.
    
   0.587
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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