STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB43RAB43, member RAS oncogene family. (212 aa)    
Predicted Functional Partners:
VPS33A
Uncharacterized protein; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.626
TBC1D22A
TBC1 domain family member 22A.
    
 
 0.565
VPS33B
VPS33B late endosome and lysosome associated; Belongs to the STXBP/unc-18/SEC1 family.
    
 0.530
YIF1B
Yip1 interacting factor homolog B, membrane trafficking protein.
   
 
 0.521
WDR78
WD repeat domain 78.
     
 0.517
USO1
USO1 vesicle transport factor.
   
 
 0.509
TRAPPC1
Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family.
    
 
 0.501
WDR63
WD repeat domain 63.
     
 0.489
ATG16L2
Autophagy related 16 like 2.
    
 0.489
TRAPPC8
Trafficking protein particle complex 8.
    
 
 0.489
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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