STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAB30RAB30, member RAS oncogene family. (203 aa)    
Predicted Functional Partners:
GDPD4
Glycerophosphodiester phosphodiesterase domain containing 4.
   
  
 0.872
RBMX
RNA binding motif protein X-linked.
      
 0.789
RPS28
Ribosomal protein S28.
   
  
 0.783
AVL9
AVL9 cell migration associated.
   
  
 0.777
RIC1
RIC1 homolog, RAB6A GEF complex partner 1.
      
 0.769
PDF
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.747
CCDC90B
Coiled-coil domain containing 90B.
   
  
 0.710
COG5
Component of oligomeric golgi complex 5.
   
 
 0.704
NOB1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
      
 0.693
COG4
Component of oligomeric golgi complex 4.
   
 0.686
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.