STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMG9SMG9 nonsense mediated mRNA decay factor. (520 aa)    
Predicted Functional Partners:
SMG8
SMG8 nonsense mediated mRNA decay factor.
    
 0.999
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 
 0.956
SMG1
SMG1 nonsense mediated mRNA decay associated PI3K related kinase; Belongs to the PI3/PI4-kinase family.
    
 
 0.945
RBM8A
RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.
    
 
 0.938
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
  
 0.906
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.861
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 
 0.841
OGT
O-linked N-acetylglucosamine (GlcNAc) transferase.
    
   0.769
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
  
 0.695
HUWE1
HECT, UBA and WWE domain containing E3 ubiquitin protein ligase 1.
      
 0.635
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.