GGA3 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GGA3

Golgi associated, gamma adaptin ear containing, ARF binding protein 3. (729 aa)

Predicted Functional Partners:

RABEP1

0.964

ARF6

0.963

GGA2

0.961

GGA1

0.960

IGF2R

0.942

M6PR

0.909

IFFO2

0.804

UBB

0.730

LOC100685053

0.730

GORASP1

0.694

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARF6	GGA1	ENSCAFP00000053847	ENSCAFP00000053910	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.597
ARF6	GGA3	ENSCAFP00000053847	ENSCAFP00000007064	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.963
GGA1	ARF6	ENSCAFP00000053910	ENSCAFP00000053847	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.597
GGA1	GGA2	ENSCAFP00000053910	ENSCAFP00000031044	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	0.964
GGA1	GGA3	ENSCAFP00000053910	ENSCAFP00000007064	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.960
GGA1	IGF2R	ENSCAFP00000053910	ENSCAFP00000036713	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Cation-independent mannose-6-phosphate/insulin-like growth factor 2 receptor protein.	0.934
GGA1	M6PR	ENSCAFP00000053910	ENSCAFP00000063830	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Mannose-6-phosphate receptor, cation dependent.	0.578
GGA1	RABEP1	ENSCAFP00000053910	ENSCAFP00000022927	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	Rabaptin, RAB GTPase binding effector protein 1.	0.946
GGA2	GGA1	ENSCAFP00000031044	ENSCAFP00000053910	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.964
GGA2	GGA3	ENSCAFP00000031044	ENSCAFP00000007064	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	0.961
GGA2	GORASP1	ENSCAFP00000031044	ENSCAFP00000064182	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Golgi reassembly stacking protein 1.	0.708
GGA2	IGF2R	ENSCAFP00000031044	ENSCAFP00000036713	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Cation-independent mannose-6-phosphate/insulin-like growth factor 2 receptor protein.	0.804
GGA2	M6PR	ENSCAFP00000031044	ENSCAFP00000063830	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Mannose-6-phosphate receptor, cation dependent.	0.451
GGA2	RABEP1	ENSCAFP00000031044	ENSCAFP00000022927	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	Rabaptin, RAB GTPase binding effector protein 1.	0.892
GGA3	ARF6	ENSCAFP00000007064	ENSCAFP00000053847	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	ADP ribosylation factor 6; Belongs to the small GTPase superfamily. Arf family.	0.963
GGA3	GGA1	ENSCAFP00000007064	ENSCAFP00000053910	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Golgi associated, gamma adaptin ear containing, ARF binding protein 1.	0.960
GGA3	GGA2	ENSCAFP00000007064	ENSCAFP00000031044	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Golgi associated, gamma adaptin ear containing, ARF binding protein 2.	0.961
GGA3	GORASP1	ENSCAFP00000007064	ENSCAFP00000064182	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Golgi reassembly stacking protein 1.	0.694
GGA3	IFFO2	ENSCAFP00000007064	ENSCAFP00000055655	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Intermediate filament family orphan 2; Belongs to the intermediate filament family.	0.804
GGA3	IGF2R	ENSCAFP00000007064	ENSCAFP00000036713	Golgi associated, gamma adaptin ear containing, ARF binding protein 3.	Cation-independent mannose-6-phosphate/insulin-like growth factor 2 receptor protein.	0.942