UCMA protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

UCMA

Upper zone of growth plate and cartilage matrix associated. (138 aa)

Predicted Functional Partners:

PMPCB

0.795

TMTC1

0.688

ADGRG1

0.626

EFCAB2

0.613

BCAP31

0.591

ZNF536

0.582

FIBIN

0.575

SERGEF

0.575

LYZL4

0.562

J9NRR8_CANLF

0.562

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ADGRG1	BCAP31	ENSCAFP00000012785	ENSCAFP00000031361	Adhesion G protein-coupled receptor G1; Belongs to the G-protein coupled receptor 2 family.	B cell receptor associated protein 31.	0.592
ADGRG1	TMTC1	ENSCAFP00000012785	ENSCAFP00000015936	Adhesion G protein-coupled receptor G1; Belongs to the G-protein coupled receptor 2 family.	Transmembrane O-mannosyltransferase targeting cadherins 1.	0.742
ADGRG1	UCMA	ENSCAFP00000012785	ENSCAFP00000007075	Adhesion G protein-coupled receptor G1; Belongs to the G-protein coupled receptor 2 family.	Upper zone of growth plate and cartilage matrix associated.	0.626
BCAP31	ADGRG1	ENSCAFP00000031361	ENSCAFP00000012785	B cell receptor associated protein 31.	Adhesion G protein-coupled receptor G1; Belongs to the G-protein coupled receptor 2 family.	0.592
BCAP31	TMTC1	ENSCAFP00000031361	ENSCAFP00000015936	B cell receptor associated protein 31.	Transmembrane O-mannosyltransferase targeting cadherins 1.	0.597
BCAP31	UCMA	ENSCAFP00000031361	ENSCAFP00000007075	B cell receptor associated protein 31.	Upper zone of growth plate and cartilage matrix associated.	0.591
EFCAB2	UCMA	ENSCAFP00000036390	ENSCAFP00000007075	EF-hand calcium binding domain 2.	Upper zone of growth plate and cartilage matrix associated.	0.613
FIBIN	SERGEF	ENSCAFP00000014937	ENSCAFP00000050259	Fin bud initiation factor homolog (zebrafish).	Secretion regulating guanine nucleotide exchange factor.	0.467
FIBIN	UCMA	ENSCAFP00000014937	ENSCAFP00000007075	Fin bud initiation factor homolog (zebrafish).	Upper zone of growth plate and cartilage matrix associated.	0.575
FIBIN	ZNF536	ENSCAFP00000014937	ENSCAFP00000054672	Fin bud initiation factor homolog (zebrafish).	Zinc finger protein 536.	0.636
J9NRR8_CANLF	LYZL4	ENSCAFP00000036193	ENSCAFP00000035021	Uncharacterized protein.	Lysozyme like 4.	0.563
J9NRR8_CANLF	UCMA	ENSCAFP00000036193	ENSCAFP00000007075	Uncharacterized protein.	Upper zone of growth plate and cartilage matrix associated.	0.562
LYZL4	J9NRR8_CANLF	ENSCAFP00000035021	ENSCAFP00000036193	Lysozyme like 4.	Uncharacterized protein.	0.563
LYZL4	UCMA	ENSCAFP00000035021	ENSCAFP00000007075	Lysozyme like 4.	Upper zone of growth plate and cartilage matrix associated.	0.562
PMPCB	UCMA	ENSCAFP00000006194	ENSCAFP00000007075	Peptidase, mitochondrial processing beta subunit; Belongs to the peptidase M16 family.	Upper zone of growth plate and cartilage matrix associated.	0.795
SERGEF	FIBIN	ENSCAFP00000050259	ENSCAFP00000014937	Secretion regulating guanine nucleotide exchange factor.	Fin bud initiation factor homolog (zebrafish).	0.467
SERGEF	UCMA	ENSCAFP00000050259	ENSCAFP00000007075	Secretion regulating guanine nucleotide exchange factor.	Upper zone of growth plate and cartilage matrix associated.	0.575
SERGEF	ZNF536	ENSCAFP00000050259	ENSCAFP00000054672	Secretion regulating guanine nucleotide exchange factor.	Zinc finger protein 536.	0.695
TMTC1	ADGRG1	ENSCAFP00000015936	ENSCAFP00000012785	Transmembrane O-mannosyltransferase targeting cadherins 1.	Adhesion G protein-coupled receptor G1; Belongs to the G-protein coupled receptor 2 family.	0.742
TMTC1	BCAP31	ENSCAFP00000015936	ENSCAFP00000031361	Transmembrane O-mannosyltransferase targeting cadherins 1.	B cell receptor associated protein 31.	0.597