STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PCDH20Protocadherin 20. (951 aa)    
Predicted Functional Partners:
PCDH7
Protocadherin 7.
   
  0.952
PCDH1
Protocadherin 1.
   
 0.902
NBAS
Neuroblastoma amplified sequence.
      
 0.776
CENPA
Centromere protein A.
      
 0.771
RAB33A
RAB33A, member RAS oncogene family.
   
  
 0.737
PCDH9
Protocadherin 9.
   
  0.726
PCDH11X
Uncharacterized protein.
   
  0.726
RAB9B
RAB9B, member RAS oncogene family.
   
  
 0.698
TTC6
Tetratricopeptide repeat domain 6.
   
  
 0.652
SNX25
Sorting nexin 25.
      
 0.618
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.