LOC485485 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC485485

Uncharacterized protein. (254 aa)

Predicted Functional Partners:

ACSL6

0.546

BRDT

0.544

USP44

0.536

DPY19L2

0.534

BPIFA1

0.533

SPTB

0.531

STK31

0.529

INSL6

0.526

SI

0.526

ASB17

0.523

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACSL6	BPIFA1	ENSCAFP00000039687	ENSCAFP00000056303	Acyl-CoA synthetase long chain family member 6.	BPI fold containing family A member 1.	0.523
ACSL6	BRDT	ENSCAFP00000039687	ENSCAFP00000029909	Acyl-CoA synthetase long chain family member 6.	Bromodomain testis associated.	0.525
ACSL6	DPY19L2	ENSCAFP00000039687	ENSCAFP00000004738	Acyl-CoA synthetase long chain family member 6.	Dpy-19 like 2.	0.524
ACSL6	INSL6	ENSCAFP00000039687	ENSCAFP00000003098	Acyl-CoA synthetase long chain family member 6.	Insulin like 6.	0.472
ACSL6	LOC485485	ENSCAFP00000039687	ENSCAFP00000007379	Acyl-CoA synthetase long chain family member 6.	Uncharacterized protein.	0.546
ACSL6	SPTB	ENSCAFP00000039687	ENSCAFP00000023786	Acyl-CoA synthetase long chain family member 6.	Spectrin beta chain; Belongs to the spectrin family.	0.520
ACSL6	STK31	ENSCAFP00000039687	ENSCAFP00000004131	Acyl-CoA synthetase long chain family member 6.	Serine/threonine kinase 31.	0.548
ACSL6	USP44	ENSCAFP00000039687	ENSCAFP00000009548	Acyl-CoA synthetase long chain family member 6.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.525
ASB17	BPIFA1	ENSCAFP00000030238	ENSCAFP00000056303	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	BPI fold containing family A member 1.	0.521
ASB17	BRDT	ENSCAFP00000030238	ENSCAFP00000029909	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	Bromodomain testis associated.	0.520
ASB17	DPY19L2	ENSCAFP00000030238	ENSCAFP00000004738	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	Dpy-19 like 2.	0.584
ASB17	LOC485485	ENSCAFP00000030238	ENSCAFP00000007379	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	Uncharacterized protein.	0.523
ASB17	SPTB	ENSCAFP00000030238	ENSCAFP00000023786	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	Spectrin beta chain; Belongs to the spectrin family.	0.486
ASB17	STK31	ENSCAFP00000030238	ENSCAFP00000004131	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	Serine/threonine kinase 31.	0.521
ASB17	USP44	ENSCAFP00000030238	ENSCAFP00000009548	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family.	0.524
BPIFA1	ACSL6	ENSCAFP00000056303	ENSCAFP00000039687	BPI fold containing family A member 1.	Acyl-CoA synthetase long chain family member 6.	0.523
BPIFA1	ASB17	ENSCAFP00000056303	ENSCAFP00000030238	BPI fold containing family A member 1.	Ankyrin repeat and SOCS box protein 17; May be a substrate-recognition component of a SCF-like ECS (Elongin-Cullin-SOCS-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.	0.521
BPIFA1	BRDT	ENSCAFP00000056303	ENSCAFP00000029909	BPI fold containing family A member 1.	Bromodomain testis associated.	0.534
BPIFA1	DPY19L2	ENSCAFP00000056303	ENSCAFP00000004738	BPI fold containing family A member 1.	Dpy-19 like 2.	0.535
BPIFA1	LOC485485	ENSCAFP00000056303	ENSCAFP00000007379	BPI fold containing family A member 1.	Uncharacterized protein.	0.533