STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAPN13Calpain 13; Belongs to the peptidase C2 family. (669 aa)    
Predicted Functional Partners:
YIPF6
Protein YIPF.
      
 0.875
ARHGAP4
Rho GTPase activating protein 4.
      
 0.855
CAPNS1
Calpain small subunit 1.
   
0.795
GABRG2
Gamma-aminobutyric acid type A receptor gamma2 subunit; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
   
  
 0.789
ZSCAN12
Zinc finger and SCAN domain containing 12.
   
 
 0.763
TLK1
Tousled like kinase 1.
   
  
 0.727
LCLAT1
Lysocardiolipin acyltransferase 1.
   
  
 0.681
CAST
Calpastatin.
   
 
 0.639
ZNF106
Zinc finger protein 106.
   
 
 0.558
TMPRSS11E
Transmembrane serine protease 11E; Belongs to the peptidase S1 family.
   
 
 0.506
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.