STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERCC5Uncharacterized protein. (1627 aa)    
Predicted Functional Partners:
GTF2H1
General transcription factor IIH subunit 1.
   
 0.980
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
   
 0.970
ERCC2
ERCC excision repair 2, TFIIH core complex helicase subunit.
   
 0.968
ERCC3
ERCC excision repair 3, TFIIH core complex helicase subunit.
   
 0.964
EP300
E1A binding protein p300.
   
 0.941
BRCA2
BRCA2 DNA repair associated.
   
 
 0.936
XPA
XPA, DNA damage recognition and repair factor.
   
 0.901
BRCA1
Breast cancer type 1 susceptibility protein homolog; E3 ubiquitin-protein ligase that specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and plays a central role in DNA repair by facilitating cellular responses to DNA damage. It is unclear whether it also mediates the formation of other types of polyubiquitin chains. The E3 ubiquitin-protein ligase activity is required for its tumor suppressor function. The BRCA1-BARD1 heterodimer coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain [...]
   
 
 0.881
GTF2H2
General transcription factor IIH subunit.
   
 0.876
MUS81
MUS81 structure-specific endonuclease subunit.
   
 
 0.872
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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