CEP83 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CEP83

Centrosomal protein 83. (701 aa)

Predicted Functional Partners:

CEP164

0.983

CEP89

0.976

NIN

0.969

SCLT1

0.954

FBF1

0.874

TTBK2

0.870

CEP19

0.776

RAB11A

0.757

IFT20

0.702

IFT52

0.688

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CEP164	CEP19	ENSCAFP00000019200	ENSCAFP00000019204	Centrosomal protein 164.	Centrosomal protein 19.	0.796
CEP164	CEP83	ENSCAFP00000019200	ENSCAFP00000009329	Centrosomal protein 164.	Centrosomal protein 83.	0.983
CEP164	CEP89	ENSCAFP00000019200	ENSCAFP00000011121	Centrosomal protein 164.	Centrosomal protein 89.	0.974
CEP164	FBF1	ENSCAFP00000019200	ENSCAFP00000061212	Centrosomal protein 164.	Fas binding factor 1.	0.908
CEP164	IFT20	ENSCAFP00000019200	ENSCAFP00000027528	Centrosomal protein 164.	Intraflagellar transport 20.	0.823
CEP164	IFT52	ENSCAFP00000019200	ENSCAFP00000013725	Centrosomal protein 164.	Intraflagellar transport 52.	0.626
CEP164	NIN	ENSCAFP00000019200	ENSCAFP00000021474	Centrosomal protein 164.	Ninein.	0.983
CEP164	RAB11A	ENSCAFP00000019200	ENSCAFP00000025408	Centrosomal protein 164.	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	0.615
CEP164	SCLT1	ENSCAFP00000019200	ENSCAFP00000040314	Centrosomal protein 164.	Sodium channel and clathrin linker 1.	0.888
CEP164	TTBK2	ENSCAFP00000019200	ENSCAFP00000016528	Centrosomal protein 164.	Tau tubulin kinase 2.	0.953
CEP19	CEP164	ENSCAFP00000019204	ENSCAFP00000019200	Centrosomal protein 19.	Centrosomal protein 164.	0.796
CEP19	CEP83	ENSCAFP00000019204	ENSCAFP00000009329	Centrosomal protein 19.	Centrosomal protein 83.	0.776
CEP19	CEP89	ENSCAFP00000019204	ENSCAFP00000011121	Centrosomal protein 19.	Centrosomal protein 89.	0.704
CEP19	FBF1	ENSCAFP00000019204	ENSCAFP00000061212	Centrosomal protein 19.	Fas binding factor 1.	0.714
CEP19	IFT20	ENSCAFP00000019204	ENSCAFP00000027528	Centrosomal protein 19.	Intraflagellar transport 20.	0.529
CEP19	IFT52	ENSCAFP00000019204	ENSCAFP00000013725	Centrosomal protein 19.	Intraflagellar transport 52.	0.563
CEP19	NIN	ENSCAFP00000019204	ENSCAFP00000021474	Centrosomal protein 19.	Ninein.	0.593
CEP19	RAB11A	ENSCAFP00000019204	ENSCAFP00000025408	Centrosomal protein 19.	Ras-related protein Rab-11A; The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes. Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion. The small Rab GTPase RAB11A regulates endocytic recycling. Acts as a major regulator of membrane delivery during cytokinesis. Together with MYO5B and RAB8A participates in epithelial c [...]	0.450
CEP19	SCLT1	ENSCAFP00000019204	ENSCAFP00000040314	Centrosomal protein 19.	Sodium channel and clathrin linker 1.	0.703
CEP19	TTBK2	ENSCAFP00000019204	ENSCAFP00000016528	Centrosomal protein 19.	Tau tubulin kinase 2.	0.692