SCGB1C1 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SCGB1C1

Uncharacterized protein. (95 aa)

Predicted Functional Partners:

CPA4

0.877

CPA1

0.719

MST1

0.702

KANK2

0.691

MTIF3

0.600

GNAZ

0.577

PTPN20

0.574

CACNA1A

0.555

CACNA1B

0.555

INSM2

0.533

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CACNA1A	CACNA1B	ENSCAFP00000024912	ENSCAFP00000054006	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents.	Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.	0.927
CACNA1A	GNAZ	ENSCAFP00000024912	ENSCAFP00000020136	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents.	G protein subunit alpha z.	0.439
CACNA1A	MST1	ENSCAFP00000024912	ENSCAFP00000016787	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents.	Macrophage stimulating 1; Belongs to the peptidase S1 family. Plasminogen subfamily.	0.472
CACNA1A	SCGB1C1	ENSCAFP00000024912	ENSCAFP00000009606	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents.	Uncharacterized protein.	0.555
CACNA1B	CACNA1A	ENSCAFP00000054006	ENSCAFP00000024912	Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents.	0.927
CACNA1B	GNAZ	ENSCAFP00000054006	ENSCAFP00000020136	Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.	G protein subunit alpha z.	0.439
CACNA1B	MST1	ENSCAFP00000054006	ENSCAFP00000016787	Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.	Macrophage stimulating 1; Belongs to the peptidase S1 family. Plasminogen subfamily.	0.472
CACNA1B	SCGB1C1	ENSCAFP00000054006	ENSCAFP00000009606	Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.	Uncharacterized protein.	0.555
CPA1	CPA4	ENSCAFP00000065526	ENSCAFP00000002144	Carboxypeptidase A1.	Carboxypeptidase A4.	0.881
CPA1	SCGB1C1	ENSCAFP00000065526	ENSCAFP00000009606	Carboxypeptidase A1.	Uncharacterized protein.	0.719
CPA4	CPA1	ENSCAFP00000002144	ENSCAFP00000065526	Carboxypeptidase A4.	Carboxypeptidase A1.	0.881
CPA4	KANK2	ENSCAFP00000002144	ENSCAFP00000025591	Carboxypeptidase A4.	KN motif and ankyrin repeat domains 2.	0.594
CPA4	MTIF3	ENSCAFP00000002144	ENSCAFP00000010129	Carboxypeptidase A4.	Mitochondrial translational initiation factor 3.	0.487
CPA4	SCGB1C1	ENSCAFP00000002144	ENSCAFP00000009606	Carboxypeptidase A4.	Uncharacterized protein.	0.877
GNAZ	CACNA1A	ENSCAFP00000020136	ENSCAFP00000024912	G protein subunit alpha z.	Voltage-dependent P/Q-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1A gives rise to P and/or Q- type calcium currents.	0.439
GNAZ	CACNA1B	ENSCAFP00000020136	ENSCAFP00000054006	G protein subunit alpha z.	Voltage-dependent N-type calcium channel subunit alpha; Voltage-sensitive calcium channels (VSCC) mediate the entry of calcium ions into excitable cells and are also involved in a variety of calcium-dependent processes, including muscle contraction, hormone or neurotransmitter release, gene expression, cell motility, cell division and cell death. The isoform alpha-1B gives rise to N-type calcium currents.	0.439
GNAZ	PTPN20	ENSCAFP00000020136	ENSCAFP00000064586	G protein subunit alpha z.	Protein tyrosine phosphatase non-receptor type 20.	0.542
GNAZ	SCGB1C1	ENSCAFP00000020136	ENSCAFP00000009606	G protein subunit alpha z.	Uncharacterized protein.	0.577
INSM2	SCGB1C1	ENSCAFP00000035268	ENSCAFP00000009606	INSM transcriptional repressor 2.	Uncharacterized protein.	0.533
KANK2	CPA4	ENSCAFP00000025591	ENSCAFP00000002144	KN motif and ankyrin repeat domains 2.	Carboxypeptidase A4.	0.594