STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UPF3AUPF3A regulator of nonsense mediated mRNA decay. (532 aa)    
Predicted Functional Partners:
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
   
 0.995
SMG6
SMG6 nonsense mediated mRNA decay factor.
   
 0.989
UPF1
UPF1 RNA helicase and ATPase.
    
 0.983
SMG5
SMG5 nonsense mediated mRNA decay factor.
   
 0.983
UPF3B
UPF3B regulator of nonsense mediated mRNA decay.
  
  
0.972
SMG7
SMG7 nonsense mediated mRNA decay factor.
   
 0.965
MAGOHB
Uncharacterized protein.
    
 0.963
NXF3
Nuclear RNA export factor 3.
    
 0.948
NXF1
Nuclear RNA export factor 1.
    
 0.948
LOC492026
Uncharacterized protein.
    
 0.948
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.