STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMF1TATA element modulatory factor 1. (1058 aa)    
Predicted Functional Partners:
RAB6A
RAB6A, member RAS oncogene family.
   
 0.749
PDF
Conserved oligomeric Golgi complex subunit 8; Belongs to the COG8 family.
     
 0.679
RPS15A
Uncharacterized protein; Belongs to the universal ribosomal protein uS8 family.
      
 0.676
COG4
Component of oligomeric golgi complex 4.
     
 0.674
GCC2
GRIP and coiled-coil domain containing 2.
   
 0.652
GCC1
GRIP and coiled-coil domain containing 1.
     
 0.629
RAB6B
RAB6B, member RAS oncogene family.
    
 0.629
VPS54
VPS54 subunit of GARP complex.
   
 
 0.618
DNAJC21
DnaJ heat shock protein family (Hsp40) member C21.
   
  
 0.612
CYBB
Cytochrome b-245 beta chain.
   
  
 0.606
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.