GATD1 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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[Homology]

Score

GATD1

Uncharacterized protein. (458 aa)

Predicted Functional Partners:

DNAAF3

0.643

TNNI3

0.643

TNNI2

0.643

TNNI1

0.643

GLO1

0.569

TPM2

0.512

TPM4

0.512

ENSCAFP00000043563

0.512

TPM3

0.512

ENSCAFP00000048555

0.512

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DNAAF3	ENSCAFP00000043563	ENSCAFP00000003802	ENSCAFP00000043563	Dynein axonemal assembly factor 3.	Uncharacterized protein.	0.515
DNAAF3	ENSCAFP00000048555	ENSCAFP00000003802	ENSCAFP00000048555	Dynein axonemal assembly factor 3.	Uncharacterized protein.	0.515
DNAAF3	GATD1	ENSCAFP00000003802	ENSCAFP00000009908	Dynein axonemal assembly factor 3.	Uncharacterized protein.	0.643
DNAAF3	TNNI1	ENSCAFP00000003802	ENSCAFP00000015880	Dynein axonemal assembly factor 3.	Troponin I1, slow skeletal type.	0.502
DNAAF3	TNNI3	ENSCAFP00000003802	ENSCAFP00000003805	Dynein axonemal assembly factor 3.	Troponin I, cardiac muscle; Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.	0.616
DNAAF3	TPM2	ENSCAFP00000003802	ENSCAFP00000023237	Dynein axonemal assembly factor 3.	Tropomyosin 2; Belongs to the tropomyosin family.	0.515
DNAAF3	TPM3	ENSCAFP00000003802	ENSCAFP00000044390	Dynein axonemal assembly factor 3.	Tropomyosin 3; Belongs to the tropomyosin family.	0.515
DNAAF3	TPM4	ENSCAFP00000003802	ENSCAFP00000023240	Dynein axonemal assembly factor 3.	Tropomyosin 4; Belongs to the tropomyosin family.	0.515
ENSCAFP00000043563	DNAAF3	ENSCAFP00000043563	ENSCAFP00000003802	Uncharacterized protein.	Dynein axonemal assembly factor 3.	0.515
ENSCAFP00000043563	GATD1	ENSCAFP00000043563	ENSCAFP00000009908	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSCAFP00000043563	TNNI1	ENSCAFP00000043563	ENSCAFP00000015880	Uncharacterized protein.	Troponin I1, slow skeletal type.	0.695
ENSCAFP00000043563	TNNI2	ENSCAFP00000043563	ENSCAFP00000014808	Uncharacterized protein.	Troponin I2, fast skeletal type.	0.649
ENSCAFP00000043563	TNNI3	ENSCAFP00000043563	ENSCAFP00000003805	Uncharacterized protein.	Troponin I, cardiac muscle; Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.	0.816
ENSCAFP00000048555	DNAAF3	ENSCAFP00000048555	ENSCAFP00000003802	Uncharacterized protein.	Dynein axonemal assembly factor 3.	0.515
ENSCAFP00000048555	GATD1	ENSCAFP00000048555	ENSCAFP00000009908	Uncharacterized protein.	Uncharacterized protein.	0.512
ENSCAFP00000048555	TNNI1	ENSCAFP00000048555	ENSCAFP00000015880	Uncharacterized protein.	Troponin I1, slow skeletal type.	0.695
ENSCAFP00000048555	TNNI2	ENSCAFP00000048555	ENSCAFP00000014808	Uncharacterized protein.	Troponin I2, fast skeletal type.	0.649
ENSCAFP00000048555	TNNI3	ENSCAFP00000048555	ENSCAFP00000003805	Uncharacterized protein.	Troponin I, cardiac muscle; Troponin I is the inhibitory subunit of troponin, the thin filament regulatory complex which confers calcium-sensitivity to striated muscle actomyosin ATPase activity.	0.774
GATD1	DNAAF3	ENSCAFP00000009908	ENSCAFP00000003802	Uncharacterized protein.	Dynein axonemal assembly factor 3.	0.643
GATD1	ENSCAFP00000043563	ENSCAFP00000009908	ENSCAFP00000043563	Uncharacterized protein.	Uncharacterized protein.	0.512