STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM55Tripartite motif containing 55. (550 aa)    
Predicted Functional Partners:
TRIM63
Tripartite motif containing 63.
   
  0.960
TRIM54
Tripartite motif containing 54.
  
 
0.914
TRIM59
Tripartite motif containing 59.
   
 
0.716
SQSTM1
Sequestosome 1.
    
 
 0.704
TRIM52
Tripartite motif containing 52.
      
 0.699
TRIM13
Tripartite motif containing 13.
   
 
  0.671
TRIM23
Tripartite motif containing 23.
    
 0.670
USP39
Ubiquitin specific peptidase 39.
    
 
 0.655
USP28
Ubiquitin specific peptidase 28; Belongs to the peptidase C19 family.
   
 
 0.639
KLHL34
Kelch like family member 34.
    
 
 0.611
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.