STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBNO1Strawberry notch homolog 1. (1393 aa)    
Predicted Functional Partners:
RIF1
Replication timing regulatory factor 1.
   
    0.745
LTN1
Listerin E3 ubiquitin protein ligase 1.
   
    0.694
BTAF1
B-TFIID TATA-box binding protein associated factor 1.
   
    0.691
PDS5A
Uncharacterized protein.
   
    0.673
WAPL
WAPL cohesin release factor.
   
    0.638
BIRC6
Baculoviral IAP repeat containing 6.
   
    0.588
NFE2L1
Nuclear factor, erythroid 2 like 1.
      
 0.524
RASGEF1A
RasGEF domain family member 1A.
      
 0.522
IL22RA2
Interleukin 22 receptor subunit alpha 2.
      
 0.519
RIOX1
Bifunctional lysine-specific demethylase and histidyl-hydroxylase; Oxygenase that can act as both a histone lysine demethylase and a ribosomal histidine hydroxylase.
      
 0.493
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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