VAMP8 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VAMP8

Vesicle associated membrane protein 8. (101 aa)

Predicted Functional Partners:

STX17

0.998

SNAP29

0.997

STX4

0.988

STX7

0.945

SNAP23

0.941

VTI1A

0.923

GOSR1

0.898

STX5

0.894

VPS39

0.893

STX6

0.890

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GOSR1	SNAP29	ENSCAFP00000028074	ENSCAFP00000022415	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Synaptosome associated protein 29.	0.598
GOSR1	STX17	ENSCAFP00000028074	ENSCAFP00000003700	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 17; Belongs to the syntaxin family.	0.792
GOSR1	STX4	ENSCAFP00000028074	ENSCAFP00000024687	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 4; Belongs to the syntaxin family.	0.418
GOSR1	STX5	ENSCAFP00000028074	ENSCAFP00000022858	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 5; Belongs to the syntaxin family.	0.996
GOSR1	STX6	ENSCAFP00000028074	ENSCAFP00000018902	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 6; Belongs to the syntaxin family.	0.719
GOSR1	STX7	ENSCAFP00000028074	ENSCAFP00000056565	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Syntaxin 7; Belongs to the syntaxin family.	0.823
GOSR1	VAMP8	ENSCAFP00000028074	ENSCAFP00000011416	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Vesicle associated membrane protein 8.	0.898
GOSR1	VTI1A	ENSCAFP00000028074	ENSCAFP00000036127	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	Vesicle transport through interaction with t-SNAREs 1A.	0.569
SNAP23	SNAP29	ENSCAFP00000016365	ENSCAFP00000022415	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Synaptosome associated protein 29.	0.568
SNAP23	STX17	ENSCAFP00000016365	ENSCAFP00000003700	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Syntaxin 17; Belongs to the syntaxin family.	0.514
SNAP23	STX4	ENSCAFP00000016365	ENSCAFP00000024687	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Syntaxin 4; Belongs to the syntaxin family.	0.996
SNAP23	STX5	ENSCAFP00000016365	ENSCAFP00000022858	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Syntaxin 5; Belongs to the syntaxin family.	0.668
SNAP23	STX6	ENSCAFP00000016365	ENSCAFP00000018902	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Syntaxin 6; Belongs to the syntaxin family.	0.687
SNAP23	STX7	ENSCAFP00000016365	ENSCAFP00000056565	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Syntaxin 7; Belongs to the syntaxin family.	0.768
SNAP23	VAMP8	ENSCAFP00000016365	ENSCAFP00000011416	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Vesicle associated membrane protein 8.	0.941
SNAP23	VTI1A	ENSCAFP00000016365	ENSCAFP00000036127	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	Vesicle transport through interaction with t-SNAREs 1A.	0.556
SNAP29	GOSR1	ENSCAFP00000022415	ENSCAFP00000028074	Synaptosome associated protein 29.	Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.	0.598
SNAP29	SNAP23	ENSCAFP00000022415	ENSCAFP00000016365	Synaptosome associated protein 29.	Synaptosomal-associated protein; Belongs to the SNAP-25 family.	0.568
SNAP29	STX17	ENSCAFP00000022415	ENSCAFP00000003700	Synaptosome associated protein 29.	Syntaxin 17; Belongs to the syntaxin family.	0.999
SNAP29	STX4	ENSCAFP00000022415	ENSCAFP00000024687	Synaptosome associated protein 29.	Syntaxin 4; Belongs to the syntaxin family.	0.793