STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD1Chromodomain helicase DNA binding protein 1. (1711 aa)    
Predicted Functional Partners:
INO80C
INO80 complex subunit C.
    
 
 0.845
RTF1
RTF1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.743
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.708
BPTF
Bromodomain PHD finger transcription factor.
   
 
 0.688
RANBP2
RAN binding protein 2.
   
   0.687
WDR43
WD repeat domain 43.
   
  
 0.626
SPOPL
Speckle type BTB/POZ protein like.
   
 
 0.614
PHF20L1
PHD finger protein 20 like 1.
   
 
 0.611
ANKMY2
Ankyrin repeat and MYND domain containing 2.
    
 
 0.608
CDC73
Cell division cycle 73.
   
 
 0.606
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.