STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RBM39RNA binding motif protein 39. (530 aa)    
Predicted Functional Partners:
SRSF11
Serine and arginine rich splicing factor 11.
   
 
 0.982
DDX5
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.980
RBM25
RNA binding motif protein 25.
   
 
 0.972
PRPF40A
Pre-mRNA processing factor 40 homolog A.
   
 0.971
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.963
DCAF15
DDB1 and CUL4 associated factor 15.
    
 
 0.958
SREK1
Splicing regulatory glutamic acid and lysine rich protein 1.
   
 
 0.956
LOC100856585
Uncharacterized protein.
   
   0.942
SON
Uncharacterized protein.
   
   0.942
SRRM2
Serine/arginine repetitive matrix 2.
   
 0.934
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.