AGBL2 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

AGBL2

ATP/GTP binding protein like 2. (863 aa)

Predicted Functional Partners:

MTCH2

0.677

FAM180B

0.582

RAPSN

0.567

PSD4

0.565

PTPMT1

0.561

LXN

0.547

SLC39A13

0.527

TMEM192

0.494

RARRES1

0.472

NCBP2

0.424

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGBL2	FAM180B	ENSCAFP00000012263	ENSCAFP00000042763	ATP/GTP binding protein like 2.	Family with sequence similarity 180 member B.	0.582
AGBL2	LXN	ENSCAFP00000012263	ENSCAFP00000013379	ATP/GTP binding protein like 2.	Latexin.	0.547
AGBL2	MTCH2	ENSCAFP00000012263	ENSCAFP00000056075	ATP/GTP binding protein like 2.	Mitochondrial carrier 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.677
AGBL2	NCBP2	ENSCAFP00000012263	ENSCAFP00000019309	ATP/GTP binding protein like 2.	Mannosyltransferase.	0.424
AGBL2	PSD4	ENSCAFP00000012263	ENSCAFP00000061769	ATP/GTP binding protein like 2.	Pleckstrin and Sec7 domain containing 4.	0.565
AGBL2	PTPMT1	ENSCAFP00000012263	ENSCAFP00000036528	ATP/GTP binding protein like 2.	Protein tyrosine phosphatase mitochondrial 1.	0.561
AGBL2	RAPSN	ENSCAFP00000012263	ENSCAFP00000012765	ATP/GTP binding protein like 2.	Receptor associated protein of the synapse.	0.567
AGBL2	RARRES1	ENSCAFP00000012263	ENSCAFP00000038350	ATP/GTP binding protein like 2.	Retinoic acid receptor responder 1.	0.472
AGBL2	SLC39A13	ENSCAFP00000012263	ENSCAFP00000012813	ATP/GTP binding protein like 2.	Solute carrier family 39 member 13.	0.527
AGBL2	TMEM192	ENSCAFP00000012263	ENSCAFP00000050087	ATP/GTP binding protein like 2.	Transmembrane protein 192.	0.494
FAM180B	AGBL2	ENSCAFP00000042763	ENSCAFP00000012263	Family with sequence similarity 180 member B.	ATP/GTP binding protein like 2.	0.582
FAM180B	MTCH2	ENSCAFP00000042763	ENSCAFP00000056075	Family with sequence similarity 180 member B.	Mitochondrial carrier 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	0.561
FAM180B	PTPMT1	ENSCAFP00000042763	ENSCAFP00000036528	Family with sequence similarity 180 member B.	Protein tyrosine phosphatase mitochondrial 1.	0.566
FAM180B	RAPSN	ENSCAFP00000042763	ENSCAFP00000012765	Family with sequence similarity 180 member B.	Receptor associated protein of the synapse.	0.580
FAM180B	SLC39A13	ENSCAFP00000042763	ENSCAFP00000012813	Family with sequence similarity 180 member B.	Solute carrier family 39 member 13.	0.561
LXN	AGBL2	ENSCAFP00000013379	ENSCAFP00000012263	Latexin.	ATP/GTP binding protein like 2.	0.547
MTCH2	AGBL2	ENSCAFP00000056075	ENSCAFP00000012263	Mitochondrial carrier 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	ATP/GTP binding protein like 2.	0.677
MTCH2	FAM180B	ENSCAFP00000056075	ENSCAFP00000042763	Mitochondrial carrier 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Family with sequence similarity 180 member B.	0.561
MTCH2	PTPMT1	ENSCAFP00000056075	ENSCAFP00000036528	Mitochondrial carrier 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Protein tyrosine phosphatase mitochondrial 1.	0.476
MTCH2	RAPSN	ENSCAFP00000056075	ENSCAFP00000012765	Mitochondrial carrier 2; Belongs to the mitochondrial carrier (TC 2.A.29) family.	Receptor associated protein of the synapse.	0.475