STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NUP54Nucleoporin 54. (508 aa)    
Predicted Functional Partners:
NUP58
Nucleoporin 58.
   
 0.998
NUP188
Nucleoporin 188.
    
 0.989
NUP43
Nucleoporin 43.
   
 0.982
NUP98
Nucleoporin 98.
   
 0.980
NUP88
Nucleoporin 88.
    
 0.979
NUP160
Nucleoporin 160.
   
 
 0.974
NUP153
Nucleoporin 153.
   
 0.972
NUP107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
   
 
 0.968
NUP205
Nucleoporin 205.
   
 
 0.966
NUP93
Nuclear pore complex protein Nup93; Plays a role in the nuclear pore complex (NPC) assembly and/or maintenance; Belongs to the nucleoporin interacting component (NIC) family.
   
 
 0.962
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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