STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LMBR1LLimb development membrane protein 1 like; Belongs to the LIMR family. (489 aa)    
Predicted Functional Partners:
FBXL20
F-box and leucine rich repeat protein 20.
   
  
 0.855
SH2D3C
SH2 domain containing 3C.
   
  
 0.774
ACVRL1
Receptor protein serine/threonine kinase; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 
 0.683
PTPN20
Protein tyrosine phosphatase non-receptor type 20.
    
 
 0.675
FAM81A
Family with sequence similarity 81 member A.
      
 0.670
YPEL3
Yippee like 3.
      
 0.670
KCNK10
Potassium two pore domain channel subfamily K member 10; Belongs to the two pore domain potassium channel (TC 1.A.1.8) family.
      
 0.669
PDE3A
Phosphodiesterase.
   
 
 0.659
SEC24A
SEC24 homolog A, COPII coat complex component.
   
 
 0.544
SASH3
SAM and SH3 domain containing 3.
      
 0.519
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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