STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRDM8PR/SET domain 8. (452 aa)    
Predicted Functional Partners:
VSX1
Visual system homeobox 1.
   
  
 0.781
FASTKD3
FAST kinase domains 3.
      
 0.739
PRDM5
Zinc finger protein.
    
 
 0.688
SMTNL1
Smoothelin like 1.
      
 0.679
IQUB
IQ motif and ubiquitin domain containing.
      
 0.675
SLC44A5
Solute carrier family 44 member 5; Belongs to the CTL (choline transporter-like) family.
   
  
 0.673
TMEM79
Transmembrane protein 79.
   
  
 0.637
DOCK4
Dedicator of cytokinesis 4; Belongs to the DOCK family.
      
 0.573
GBE1
1,4-alpha-glucan branching enzyme 1.
      
 0.555
SATB2
DNA-binding protein SATB.
      
 0.528
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.