RRP12 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RRP12

Ribosomal RNA processing 12 homolog. (1300 aa)

Predicted Functional Partners:

BYSL

0.993

NAT10

0.986

PWP2

0.981

HEATR1

0.978

PDCD11

0.977

RPF2

0.976

CEBPZ

0.975

BMS1

0.975

NOC4L

0.973

NOP14

0.973

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BMS1	BYSL	ENSCAFP00000010578	ENSCAFP00000002354	BMS1 ribosome biogenesis factor.	Bystin like.	0.984
BMS1	CEBPZ	ENSCAFP00000010578	ENSCAFP00000009146	BMS1 ribosome biogenesis factor.	CCAAT enhancer binding protein zeta.	0.929
BMS1	HEATR1	ENSCAFP00000010578	ENSCAFP00000016119	BMS1 ribosome biogenesis factor.	HEAT repeat containing 1.	0.985
BMS1	NAT10	ENSCAFP00000010578	ENSCAFP00000010456	BMS1 ribosome biogenesis factor.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.984
BMS1	NOC4L	ENSCAFP00000010578	ENSCAFP00000009478	BMS1 ribosome biogenesis factor.	Nucleolar complex associated 4 homolog.	0.947
BMS1	NOP14	ENSCAFP00000010578	ENSCAFP00000021731	BMS1 ribosome biogenesis factor.	NOP14 nucleolar protein.	0.986
BMS1	PDCD11	ENSCAFP00000010578	ENSCAFP00000015340	BMS1 ribosome biogenesis factor.	Programmed cell death 11.	0.986
BMS1	PWP2	ENSCAFP00000010578	ENSCAFP00000062521	BMS1 ribosome biogenesis factor.	Uncharacterized protein.	0.978
BMS1	RPF2	ENSCAFP00000010578	ENSCAFP00000056066	BMS1 ribosome biogenesis factor.	Ribosome production factor 2 homolog.	0.920
BMS1	RRP12	ENSCAFP00000010578	ENSCAFP00000013310	BMS1 ribosome biogenesis factor.	Ribosomal RNA processing 12 homolog.	0.975
BYSL	BMS1	ENSCAFP00000002354	ENSCAFP00000010578	Bystin like.	BMS1 ribosome biogenesis factor.	0.984
BYSL	CEBPZ	ENSCAFP00000002354	ENSCAFP00000009146	Bystin like.	CCAAT enhancer binding protein zeta.	0.914
BYSL	HEATR1	ENSCAFP00000002354	ENSCAFP00000016119	Bystin like.	HEAT repeat containing 1.	0.942
BYSL	NAT10	ENSCAFP00000002354	ENSCAFP00000010456	Bystin like.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein THUMPD1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.975
BYSL	NOC4L	ENSCAFP00000002354	ENSCAFP00000009478	Bystin like.	Nucleolar complex associated 4 homolog.	0.970
BYSL	NOP14	ENSCAFP00000002354	ENSCAFP00000021731	Bystin like.	NOP14 nucleolar protein.	0.986
BYSL	PDCD11	ENSCAFP00000002354	ENSCAFP00000015340	Bystin like.	Programmed cell death 11.	0.973
BYSL	PWP2	ENSCAFP00000002354	ENSCAFP00000062521	Bystin like.	Uncharacterized protein.	0.981
BYSL	RPF2	ENSCAFP00000002354	ENSCAFP00000056066	Bystin like.	Ribosome production factor 2 homolog.	0.956
BYSL	RRP12	ENSCAFP00000002354	ENSCAFP00000013310	Bystin like.	Ribosomal RNA processing 12 homolog.	0.993