STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PHTF1Putative homeodomain transcription factor 1. (762 aa)    
Predicted Functional Partners:
RSBN1
Round spermatid basic protein 1.
 
    
 0.921
NAGK
BcrAD_BadFG domain-containing protein.
   
  
 0.834
BCL2L15
BCL2 like 15.
      
 0.826
MAGI3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
    
 0.753
PHTF2
Putative homeodomain transcription factor 2.
    
   0.706
ZRANB3
Zinc finger RANBP2-type containing 3.
    
 
 0.637
RWDD2B
RWD domain-containing protein.
    
 
 0.606
ESYT2
Extended synaptotagmin 2.
    
 
 0.604
USP16
Ubiquitin carboxyl-terminal hydrolase 16; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes.
   
  
 0.603
SWT1
SWT1 RNA endoribonuclease homolog.
    
 
 0.597
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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