STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYT13Synaptotagmin 13. (426 aa)    
Predicted Functional Partners:
MPPED2
Metallophosphoesterase domain containing 2.
   
  
 0.743
ODF1
Outer dense fiber of sperm tails 1.
      
 0.692
SPATA20
Spermatogenesis-associated protein 20; May play a role in fertility regulation.
      
 0.686
PRDM11
PR/SET domain 11.
      
 0.636
SPATA18
Spermatogenesis associated 18.
      
 0.613
EXOC8
Exocyst complex component 8.
      
 0.607
VAMP1
Vesicle associated membrane protein 1.
   
 
 0.607
PHF21A
PHD finger protein 21A.
   
 
 0.606
RTN1
Reticulon.
    
 
 0.605
FMR1NB
FMR1 neighbor.
      
 0.600
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.