STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LDB1LIM domain binding 1. (375 aa)    
Predicted Functional Partners:
LMO2
LIM domain only 2.
   
 
 0.988
TAL1
TAL bHLH transcription factor 1, erythroid differentiation factor.
    
 
 0.948
GATA1
GATA binding protein 1.
   
 
 0.886
LHX2
LIM homeobox 2.
    
 
 0.823
LHX3
LIM homeobox 3.
    
 
 0.802
ISL1
ISL LIM homeobox 1.
    
 
 0.749
LMO1
LIM domain only 1.
    
 
 0.746
LMO4
LIM domain only 4.
   
 
 0.703
SSBP3
Single stranded DNA binding protein 3.
   
 
 0.693
SSBP4
Single stranded DNA binding protein 4.
   
 
 0.692
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.