STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PKNOX1PBX/knotted 1 homeobox 1. (436 aa)    
Predicted Functional Partners:
MYBBP1A
MYB binding protein 1a.
   
 
 0.725
MED30
Mediator complex subunit 30.
   
  
 0.657
PBX4
PBX homeobox 4.
    
 
0.612
MED21
Mediator of RNA polymerase II transcription subunit 21; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
   
  
 0.609
ZBTB24
Zinc finger and BTB domain containing 24.
   
 
 0.607
KIAA0355
KIAA0355.
   
  
 0.574
EED
Embryonic ectoderm development.
      
 0.516
GABPA
GA binding protein transcription factor subunit alpha.
   
  
 0.500
GMEB1
Glucocorticoid modulatory element binding protein 1.
   
  
 0.491
PEX7
Peroxisomal biogenesis factor 7.
   
  
 0.490
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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