STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LTO1LTO1 maturation factor of ABCE1. (261 aa)    
Predicted Functional Partners:
YAE1
YAE1 maturation factor of ABCE1.
   
 
 0.973
MMS19
MMS19 homolog, cytosolic iron-sulfur assembly component.
    
 
 0.890
ABCE1
ATP binding cassette subfamily E member 1.
    
 
 0.875
ZNF784
Zinc finger protein 784.
    
   0.786
FGF19
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.785
BEND6
BEN domain containing 6.
    
   0.720
FGF3
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.681
FGF4
Fibroblast growth factor; Belongs to the heparin-binding growth factors family.
      
 0.679
ELP3
Elongator complex protein 3; Catalytic tRNA acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation.
   
  
 0.644
STX17
Syntaxin 17; Belongs to the syntaxin family.
   
  
 0.636
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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