STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMNDC1Survival motor neuron domain containing 1. (241 aa)    
Predicted Functional Partners:
SF3A2
Splicing factor 3a subunit 2.
    
 0.963
U2SURP
U2 snRNP associated SURP domain containing.
   
 0.923
SF3B2
Splicing factor 3b subunit 2.
   
 0.916
PUF60
Poly(U) binding splicing factor 60.
   
 0.901
SF3B5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
    
 0.893
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
    
 0.875
RBM17
RNA binding motif protein 17.
   
 0.866
DDX46
DEAD-box helicase 46.
   
 0.865
CHERP
Calcium homeostasis endoplasmic reticulum protein.
   
  0.864
PRPF3
Pre-mRNA processing factor 3.
    
 
 0.859
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.