GPATCH2 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

GPATCH2

G-patch domain containing 2. (528 aa)

Predicted Functional Partners:

RRP15

0.779

DHX15

0.760

KCTD3

0.689

CCNL1

0.675

DDX10

0.670

NOL6

0.652

SPATA17

0.652

BYSL

0.649

UTP25

0.634

KRR1

0.633

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BYSL	DDX10	ENSCAFP00000002354	ENSCAFP00000021138	Bystin like.	RNA helicase.	0.969
BYSL	DHX15	ENSCAFP00000002354	ENSCAFP00000024285	Bystin like.	DEAH-box helicase 15.	0.955
BYSL	GPATCH2	ENSCAFP00000002354	ENSCAFP00000015871	Bystin like.	G-patch domain containing 2.	0.649
BYSL	KRR1	ENSCAFP00000002354	ENSCAFP00000008475	Bystin like.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.983
BYSL	NOL6	ENSCAFP00000002354	ENSCAFP00000002753	Bystin like.	Nucleolar protein 6.	0.973
BYSL	RRP15	ENSCAFP00000002354	ENSCAFP00000015941	Bystin like.	Ribosomal RNA processing 15 homolog.	0.697
BYSL	UTP25	ENSCAFP00000002354	ENSCAFP00000017661	Bystin like.	UTP25 small subunit processor component.	0.911
CCNL1	GPATCH2	ENSCAFP00000013048	ENSCAFP00000015871	Cyclin L1; Belongs to the cyclin family.	G-patch domain containing 2.	0.675
DDX10	BYSL	ENSCAFP00000021138	ENSCAFP00000002354	RNA helicase.	Bystin like.	0.969
DDX10	DHX15	ENSCAFP00000021138	ENSCAFP00000024285	RNA helicase.	DEAH-box helicase 15.	0.710
DDX10	GPATCH2	ENSCAFP00000021138	ENSCAFP00000015871	RNA helicase.	G-patch domain containing 2.	0.670
DDX10	KRR1	ENSCAFP00000021138	ENSCAFP00000008475	RNA helicase.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.892
DDX10	NOL6	ENSCAFP00000021138	ENSCAFP00000002753	RNA helicase.	Nucleolar protein 6.	0.926
DDX10	RRP15	ENSCAFP00000021138	ENSCAFP00000015941	RNA helicase.	Ribosomal RNA processing 15 homolog.	0.559
DDX10	UTP25	ENSCAFP00000021138	ENSCAFP00000017661	RNA helicase.	UTP25 small subunit processor component.	0.710
DHX15	BYSL	ENSCAFP00000024285	ENSCAFP00000002354	DEAH-box helicase 15.	Bystin like.	0.955
DHX15	DDX10	ENSCAFP00000024285	ENSCAFP00000021138	DEAH-box helicase 15.	RNA helicase.	0.710
DHX15	GPATCH2	ENSCAFP00000024285	ENSCAFP00000015871	DEAH-box helicase 15.	G-patch domain containing 2.	0.760
DHX15	KRR1	ENSCAFP00000024285	ENSCAFP00000008475	DEAH-box helicase 15.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.724
DHX15	NOL6	ENSCAFP00000024285	ENSCAFP00000002753	DEAH-box helicase 15.	Nucleolar protein 6.	0.752