STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TCERG1LTranscription elongation regulator 1 like. (569 aa)    
Predicted Functional Partners:
DDX46
DEAD-box helicase 46.
   
 
 0.890
MFAP1
Microfibril associated protein 1.
   
 
 0.881
PRPF38A
Pre-mRNA processing factor 38A.
   
 
 0.859
SF3B1
Splicing factor 3b subunit 1.
   
 
 0.859
SF3B4
Splicing factor 3b subunit 4.
    
 
 0.849
RBM22
RNA binding motif protein 22.
   
 
 0.843
SF3A1
Splicing factor 3a subunit 1.
   
   0.837
SNW1
SNW domain containing 1.
   
 
 0.837
CDC5L
Cell division cycle 5 like.
   
   0.831
PRPF8
Pre-mRNA processing factor 8.
   
 
 0.831
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.