STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD6Programmed cell death 6. (187 aa)    
Predicted Functional Partners:
PDCD6IP
Programmed cell death 6 interacting protein.
   
 
 0.758
SEC31A
SEC31 homolog A, COPII coat complex component.
   
 
 0.581
SEC31B
SEC31 homolog B, COPII coat complex component.
    
 
 0.566
HEBP2
Heme binding protein 2.
   
 
 0.560
PDCD4
Programmed cell death 4.
   
  
 0.522
MARCHF8
Membrane associated ring-CH-type finger 8.
   
  
 0.517
CAST
Calpastatin.
   
 
 0.496
ALOX5AP
Arachidonate 5-lipoxygenase activating protein.
   
  
 0.491
DDAH1
Dimethylarginine dimethylaminohydrolase 1.
      
 0.485
USO1
USO1 vesicle transport factor.
   
  
 0.484
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.