STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL20A1Collagen type XX alpha 1 chain. (1275 aa)    
Predicted Functional Partners:
COL26A1
Collagen type XXVI alpha 1 chain.
     
 0.862
SLC35C2
Solute carrier family 35 member C2.
 
      0.851
COL23A1
Collagen type XXIII alpha 1 chain.
  
 
0.708
COL8A2
Collagen type VIII alpha 2 chain.
  
  
0.673
COL4A6
Collagen type IV alpha 6 chain.
  
  
0.623
COL9A1
Collagen type IX alpha 1 chain.
  
  
0.607
MYLK2
Myosin light chain kinase 2.
    
 
 0.596
COL25A1
Collagen type XXV alpha 1 chain.
  
 
0.592
COL8A1
Collagen type VIII alpha 1 chain.
  
0.591
COL13A1
Collagen type XIII alpha 1 chain.
  
  
0.588
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.