STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COLGALT2Collagen beta(1-O)galactosyltransferase 2. (564 aa)    
Predicted Functional Partners:
CHST10
Carbohydrate sulfotransferase.
      
 0.787
COL5A2
Collagen type V alpha 2 chain.
    
 0.702
COL6A1
Collagen type VI alpha 1 chain.
   
 0.680
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
   
0.674
COL16A1
Collagen type XVI alpha 1 chain.
   
 0.667
COL4A6
Collagen type IV alpha 6 chain.
    
 0.653
PLOD1
Fe2OG dioxygenase domain-containing protein.
   
0.650
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
   
0.649
TGIF1
TGFB induced factor homeobox 1.
      
 0.585
COL17A1
120 kDa linear IgA disease antigen homolog; The 120 kDa linear IgA disease antigen homolog is an anchoring filament component involved in dermal-epidermal cohesion.
    
 0.581
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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