STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM12LSM12 homolog. (195 aa)    
Predicted Functional Partners:
ATXN2
Ataxin 2.
   
 
 0.909
DDX6
DEAD-box helicase 6; Belongs to the DEAD box helicase family.
   
 
 0.883
ATXN2L
Ataxin 2 like.
    
 
 0.880
LSM1
U6 snRNA-associated Sm-like protein LSm1; Plays a role in the degradation of histone mRNAs, the only eukaryotic mRNAs that are not polyadenylated. Probably also part of an LSm subunits-containing complex involved in the general process of mRNA degradation.
   
 
 0.748
TRNAU1AP
tRNA selenocysteine 1 associated protein 1.
    
 
 0.670
C35H6orf52
Chromosome 35 C6orf52 homolog.
    
 
 0.670
ILF2
Interleukin enhancer binding factor 2.
   
  
 0.662
DCPS
Decapping enzyme, scavenger.
   
  
 0.640
NUFIP2
Nuclear FMR1 interacting protein 2.
   
 
 0.612
KHSRP
KH-type splicing regulatory protein.
   
 
 0.580
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.