STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TMED1Transmembrane p24 trafficking protein 1. (250 aa)    
Predicted Functional Partners:
TMEM33
Transmembrane protein 33.
   
  
 0.764
FAM8A1
Family with sequence similarity 8 member A1.
      
 0.698
DOK2
Docking protein 2.
   
  
 0.657
AUP1
AUP1 lipid droplet regulating VLDL assembly factor.
   
  
 0.591
TMED4
Transmembrane p24 trafficking protein 4.
   
 
 0.591
TMEM43
Transmembrane protein 43.
   
  
 0.588
UBE2J1
Ubiquitin conjugating enzyme E2 J1.
   
  
 0.563
TMED9
Transmembrane p24 trafficking protein 9.
   
 
 0.562
LOC474642
GOLD domain-containing protein.
   
 
 0.561
C6orf58
Chromosome 6 open reading frame 58.
      
 0.559
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.