STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTL1Retrotransposon Gag like 1. (1347 aa)    
Predicted Functional Partners:
LDOC1
LDOC1 regulator of NFKB signaling.
    
 
 0.812
DLK1
Delta like non-canonical Notch ligand 1.
    
 
 0.802
FANCM
FA complementation group M.
   
 
 0.719
KCTD19
Potassium channel tetramerization domain containing 19.
    
 
 0.717
SGCE
Sarcoglycan epsilon.
   
  
 0.664
MID1
Midline 1.
      
 0.664
NAP1L5
Nucleosome assembly protein 1 like 5; Belongs to the nucleosome assembly protein (NAP) family.
   
  
 0.636
VPS26C
VPS26 endosomal protein sorting factor C.
      
 0.623
PLAGL1
PLAG1 like zinc finger 1.
    
 0.596
ZBTB14
Zinc finger and BTB domain containing 14.
    
 
 0.583
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.