CIRBP protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CIRBP

Cold inducible RNA binding protein. (172 aa)

Predicted Functional Partners:

CLASRP

0.720

TSEN34

0.673

GABPB2

0.651

CHORDC1

0.642

CELA1

0.616

NGRN

0.592

SH3BGRL2

0.576

RIOK3

0.573

MXD4

0.571

NISCH

0.567

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CELA1	CIRBP	ENSCAFP00000046064	ENSCAFP00000028846	Chymotrypsin-like elastase family member 1; Acts upon elastin; Belongs to the peptidase S1 family. Elastase subfamily.	Cold inducible RNA binding protein.	0.616
CHORDC1	CIRBP	ENSCAFP00000053737	ENSCAFP00000028846	Cysteine and histidine rich domain containing 1.	Cold inducible RNA binding protein.	0.642
CIRBP	CELA1	ENSCAFP00000028846	ENSCAFP00000046064	Cold inducible RNA binding protein.	Chymotrypsin-like elastase family member 1; Acts upon elastin; Belongs to the peptidase S1 family. Elastase subfamily.	0.616
CIRBP	CHORDC1	ENSCAFP00000028846	ENSCAFP00000053737	Cold inducible RNA binding protein.	Cysteine and histidine rich domain containing 1.	0.642
CIRBP	CLASRP	ENSCAFP00000028846	ENSCAFP00000054837	Cold inducible RNA binding protein.	CLK4 associating serine/arginine rich protein.	0.720
CIRBP	GABPB2	ENSCAFP00000028846	ENSCAFP00000018318	Cold inducible RNA binding protein.	GA binding protein transcription factor subunit beta 2.	0.651
CIRBP	MXD4	ENSCAFP00000028846	ENSCAFP00000049661	Cold inducible RNA binding protein.	MAX dimerization protein 4.	0.571
CIRBP	NGRN	ENSCAFP00000028846	ENSCAFP00000017823	Cold inducible RNA binding protein.	Neugrin, neurite outgrowth associated.	0.592
CIRBP	NISCH	ENSCAFP00000028846	ENSCAFP00000013833	Cold inducible RNA binding protein.	Nischarin.	0.567
CIRBP	RIOK3	ENSCAFP00000028846	ENSCAFP00000026892	Cold inducible RNA binding protein.	Serine/threonine-protein kinase RIO3; Involved in regulation of type I interferon (IFN)-dependent immune response which plays a critical role in the innate immune response against DNA and RNA viruses.	0.573
CIRBP	SH3BGRL2	ENSCAFP00000028846	ENSCAFP00000004172	Cold inducible RNA binding protein.	SH3 domain binding glutamate rich protein like 2.	0.576
CIRBP	TSEN34	ENSCAFP00000028846	ENSCAFP00000064419	Cold inducible RNA binding protein.	tRNA splicing endonuclease subunit 34.	0.673
CLASRP	CIRBP	ENSCAFP00000054837	ENSCAFP00000028846	CLK4 associating serine/arginine rich protein.	Cold inducible RNA binding protein.	0.720
CLASRP	GABPB2	ENSCAFP00000054837	ENSCAFP00000018318	CLK4 associating serine/arginine rich protein.	GA binding protein transcription factor subunit beta 2.	0.846
GABPB2	CIRBP	ENSCAFP00000018318	ENSCAFP00000028846	GA binding protein transcription factor subunit beta 2.	Cold inducible RNA binding protein.	0.651
GABPB2	CLASRP	ENSCAFP00000018318	ENSCAFP00000054837	GA binding protein transcription factor subunit beta 2.	CLK4 associating serine/arginine rich protein.	0.846
MXD4	CIRBP	ENSCAFP00000049661	ENSCAFP00000028846	MAX dimerization protein 4.	Cold inducible RNA binding protein.	0.571
MXD4	NGRN	ENSCAFP00000049661	ENSCAFP00000017823	MAX dimerization protein 4.	Neugrin, neurite outgrowth associated.	0.695
MXD4	NISCH	ENSCAFP00000049661	ENSCAFP00000013833	MAX dimerization protein 4.	Nischarin.	0.633
MXD4	SH3BGRL2	ENSCAFP00000049661	ENSCAFP00000004172	MAX dimerization protein 4.	SH3 domain binding glutamate rich protein like 2.	0.684