GTPBP8 protein (Canis lupus familiaris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GTPBP8

GTP binding protein 8 (putative). (288 aa)

Predicted Functional Partners:

MTG1

0.932

GTPBP3

0.920

MRM3

0.913

MALSU1

0.910

MRPL21

0.895

MRPL17

0.876

MRPL13

0.872

MRPL24

0.869

MRPL3

0.869

MRPL11

0.862

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GTPBP3	GTPBP8	ENSCAFP00000022668	ENSCAFP00000034555	GTP binding protein 3, mitochondrial.	GTP binding protein 8 (putative).	0.920
GTPBP3	MALSU1	ENSCAFP00000022668	ENSCAFP00000004063	GTP binding protein 3, mitochondrial.	Mitochondrial assembly of ribosomal large subunit 1.	0.854
GTPBP3	MRM3	ENSCAFP00000022668	ENSCAFP00000028210	GTP binding protein 3, mitochondrial.	Mitochondrial rRNA methyltransferase 3.	0.879
GTPBP3	MRPL11	ENSCAFP00000022668	ENSCAFP00000018680	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.938
GTPBP3	MRPL13	ENSCAFP00000022668	ENSCAFP00000001346	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.887
GTPBP3	MRPL17	ENSCAFP00000022668	ENSCAFP00000009852	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.856
GTPBP3	MRPL21	ENSCAFP00000022668	ENSCAFP00000039890	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L21.	0.898
GTPBP3	MRPL24	ENSCAFP00000022668	ENSCAFP00000024618	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.855
GTPBP3	MRPL3	ENSCAFP00000022668	ENSCAFP00000065175	GTP binding protein 3, mitochondrial.	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.860
GTPBP3	MTG1	ENSCAFP00000022668	ENSCAFP00000040815	GTP binding protein 3, mitochondrial.	Mitochondrial ribosome associated GTPase 1.	0.889
GTPBP8	GTPBP3	ENSCAFP00000034555	ENSCAFP00000022668	GTP binding protein 8 (putative).	GTP binding protein 3, mitochondrial.	0.920
GTPBP8	MALSU1	ENSCAFP00000034555	ENSCAFP00000004063	GTP binding protein 8 (putative).	Mitochondrial assembly of ribosomal large subunit 1.	0.910
GTPBP8	MRM3	ENSCAFP00000034555	ENSCAFP00000028210	GTP binding protein 8 (putative).	Mitochondrial rRNA methyltransferase 3.	0.913
GTPBP8	MRPL11	ENSCAFP00000034555	ENSCAFP00000018680	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L11; Belongs to the universal ribosomal protein uL11 family.	0.862
GTPBP8	MRPL13	ENSCAFP00000034555	ENSCAFP00000001346	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.	0.872
GTPBP8	MRPL17	ENSCAFP00000034555	ENSCAFP00000009852	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.	0.876
GTPBP8	MRPL21	ENSCAFP00000034555	ENSCAFP00000039890	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L21.	0.895
GTPBP8	MRPL24	ENSCAFP00000034555	ENSCAFP00000024618	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L24; Belongs to the universal ribosomal protein uL24 family.	0.869
GTPBP8	MRPL3	ENSCAFP00000034555	ENSCAFP00000065175	GTP binding protein 8 (putative).	Mitochondrial ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.869
GTPBP8	MTG1	ENSCAFP00000034555	ENSCAFP00000040815	GTP binding protein 8 (putative).	Mitochondrial ribosome associated GTPase 1.	0.932