STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC102157323Uncharacterized protein; Belongs to the eukaryotic ribosomal protein eL42 family. (115 aa)    
Predicted Functional Partners:
FAU
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 
 0.987
ENSCAFP00000054759
Ubiquitin-like domain-containing protein.
   
 
 0.987
ENSCAFP00000061156
Ubiquitin-like domain-containing protein.
   
 
 0.987
RPS18
40S ribosomal protein S18; Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA; Belongs to the universal ribosomal protein uS13 family.
   
 
 0.953
RPS5
Ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.
   
 
 0.948
RPL15
60S ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.
   
 
 0.906
RPL24
Ribosomal protein L24.
   
 
 0.906
RPL19
60S ribosomal protein L19.
   
 
 0.902
RPL8
Ribosomal protein L8.
   
 
 0.898
RPS28
Ribosomal protein S28.
   
 
 0.884
Your Current Organism:
Canis lupus familiaris
NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs
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