J9P581_CANLF protein (Canis lupus familiaris)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

J9P581_CANLF

eRF1_1 domain-containing protein. (396 aa)

Predicted Functional Partners:

ABCE1

0.960

GSPT1

0.917

GSPT2

0.917

SMG1

0.877

FAU

0.864

ENSCAFP00000054759

0.864

ENSCAFP00000061156

0.864

ETF1

0.801

EPRS1

0.757

PA2G4

0.733

Your Current Organism:

Canis lupus familiaris

NCBI taxonomy Id: 9615
Other names: C. lupus familiaris, Canis canis, Canis domesticus, Canis familiaris, beagle dog, beagle dogs, dog, dogs

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ABCE1	ENSCAFP00000054759	ENSCAFP00000011283	ENSCAFP00000054759	ATP binding cassette subfamily E member 1.	Ubiquitin-like domain-containing protein.	0.980
ABCE1	ENSCAFP00000061156	ENSCAFP00000011283	ENSCAFP00000061156	ATP binding cassette subfamily E member 1.	Ubiquitin-like domain-containing protein.	0.980
ABCE1	EPRS1	ENSCAFP00000011283	ENSCAFP00000063801	ATP binding cassette subfamily E member 1.	Glutamyl-prolyl-tRNA synthetase.	0.752
ABCE1	ETF1	ENSCAFP00000011283	ENSCAFP00000001835	ATP binding cassette subfamily E member 1.	Uncharacterized protein.	0.960
ABCE1	FAU	ENSCAFP00000011283	ENSCAFP00000033982	ATP binding cassette subfamily E member 1.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.980
ABCE1	GSPT1	ENSCAFP00000011283	ENSCAFP00000031440	ATP binding cassette subfamily E member 1.	G1 to S phase transition 1.	0.742
ABCE1	GSPT2	ENSCAFP00000011283	ENSCAFP00000041929	ATP binding cassette subfamily E member 1.	G1 to S phase transition 2.	0.735
ABCE1	J9P581_CANLF	ENSCAFP00000011283	ENSCAFP00000040757	ATP binding cassette subfamily E member 1.	eRF1_1 domain-containing protein.	0.960
ABCE1	PA2G4	ENSCAFP00000011283	ENSCAFP00000000143	ATP binding cassette subfamily E member 1.	Proliferation-associated 2G4.	0.731
ENSCAFP00000054759	ABCE1	ENSCAFP00000054759	ENSCAFP00000011283	Ubiquitin-like domain-containing protein.	ATP binding cassette subfamily E member 1.	0.980
ENSCAFP00000054759	ENSCAFP00000061156	ENSCAFP00000054759	ENSCAFP00000061156	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.913
ENSCAFP00000054759	EPRS1	ENSCAFP00000054759	ENSCAFP00000063801	Ubiquitin-like domain-containing protein.	Glutamyl-prolyl-tRNA synthetase.	0.908
ENSCAFP00000054759	ETF1	ENSCAFP00000054759	ENSCAFP00000001835	Ubiquitin-like domain-containing protein.	Uncharacterized protein.	0.864
ENSCAFP00000054759	FAU	ENSCAFP00000054759	ENSCAFP00000033982	Ubiquitin-like domain-containing protein.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.912
ENSCAFP00000054759	GSPT1	ENSCAFP00000054759	ENSCAFP00000031440	Ubiquitin-like domain-containing protein.	G1 to S phase transition 1.	0.717
ENSCAFP00000054759	GSPT2	ENSCAFP00000054759	ENSCAFP00000041929	Ubiquitin-like domain-containing protein.	G1 to S phase transition 2.	0.717
ENSCAFP00000054759	J9P581_CANLF	ENSCAFP00000054759	ENSCAFP00000040757	Ubiquitin-like domain-containing protein.	eRF1_1 domain-containing protein.	0.864
ENSCAFP00000054759	PA2G4	ENSCAFP00000054759	ENSCAFP00000000143	Ubiquitin-like domain-containing protein.	Proliferation-associated 2G4.	0.973
ENSCAFP00000061156	ABCE1	ENSCAFP00000061156	ENSCAFP00000011283	Ubiquitin-like domain-containing protein.	ATP binding cassette subfamily E member 1.	0.980
ENSCAFP00000061156	ENSCAFP00000054759	ENSCAFP00000061156	ENSCAFP00000054759	Ubiquitin-like domain-containing protein.	Ubiquitin-like domain-containing protein.	0.913